odgi server
Start a basic HTTP server with a given path index file to go from path:position to pangenome:position very efficiently.
SYNOPSIS
odgi server [-i, --idx=FILE] [-p, --port=N] [OPTION]…
DESCRIPTION
The odgi server command starts an HTTP server with a given path
index as input. The idea is that we can go from path:position →
pangenome:position via GET requests to the HTTP server. The server
headers do not block cross origin requests. Example GET request:
http://localost:3000/path_name/nucleotide_position.
The required path index can be created with odgi pathindex. Going from
path:position → pangenome:position is important when
navigating large graphs in an interactive manner like in the
Pantograph project. All input
and output positions are 1-based. If no IP address is specified, the
server will run on localhost.
OPTIONS
MANDATORY OPTIONS
-i, --idx=FILE
Load the succinct variation graph index from this FILE. The file name usually ends with .xp.
-p, --port=N
Run the server under this port.
HTTP Options
-a, --ip=IP
Run the server under this IP address. If not specified, IP will be
localhost.
Program Information
-h, --help
Print a help message for odgi server.