odgi unchop

Merge unitigs into a single node preserving the node order.

SYNOPSIS

odgi unchop [-i, --idx=FILE] [-o, --out=FILE] [OPTION]…

DESCRIPTION

The odgi unchop command merges each unitig into a single node preserving the node order.

OPTIONS

Graph Files IO

-i, --idx=FILE

File containing the succinct variation graph to unchop. The file name usually ends with .og. It also accepts GFAv1, but the on-the-fly conversion to the ODGI format requires additional time!

-o, --out=FILE

Write the unchopped dynamic succinct variation graph in ODGI format to this FILE. A file ending with .og is recommended.

Threading

-t, --threads=N

Number of threads to use for the parallel operations.

Processing Information

-P, --progress

Print information about the process to stderr.

Program Information

-h, --help

Print a help message for odgi unchop.