odgi view

Project a graph into other formats.

SYNOPSIS

odgi view [-i, --idx=FILE] [OPTION]…

DESCRIPTION

The odgi view command can convert a graph in odgi format to GFAv1. It can reveal a graph’s internal structures for e.g. debugging processes.

OPTIONS

MANDATORY OPTIONS

-i, --idx=FILE

Load the succinct variation graph in ODGI format from this FILE. The file name usually ends with .og. It also accepts GFAv1, but the on-the-fly conversion to the ODGI format requires additional time!

Output Options

-g, --to-gfa

Write the graph in GFAv1 format to standard output.

-a, --node-annotation

Emit node annotations for the graph in GFAv1 format.

Summary Options

-d, --display

Show the internal structures of a graph. Print to stderr the maximum node identifier, the minimum node identifier, the nodes vector, the delete nodes bit vector and the path metadata, each in a separate line.

Threading

-t, --threads=N

Number of threads to use for parallel operations.

Processing Information

-P, --progress

Print information about the operations and the progress to stderr.

Program Information

-h, --help

Print a help message for odgi view.